RetrogeneDB ID: | retro_ptro_2721 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:126088369..126089446(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000001427 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POU5F1 | ||
Ensembl ID: | ENSPTRG00000017953 | ||
Aliases: | POU5F1, OTF-3, oct-3 | ||
Description: | Pan troglodytes POU class 5 homeobox 1 (POU5F1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252041] |
Percent Identity: | 96.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFC |
MAGHLASDFAFSPPPGG.GDGPGGPEPGWVDP.TWL.FQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFC | |
Retrocopy | MAGHLASDFAFSPPPGGEGDGPGGPEPGWVDPLTWLRFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFC |
Parental | GGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIK |
GGMAYCGPQVG.GLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTV.PGAVKLEKEKLEQNPEESQDIK | |
Retrocopy | GGMAYCGPQVGAGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVPPGAVKLEKEKLEQNPEESQDIK |
Parental | ALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEE |
ALQKELEQFAKLLKQKRITLGYTQADVGL.LGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEE | |
Retrocopy | ALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEE |
Parental | ADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCN |
.DNNENLQEICKAETL.QARKRKRTSIENRVRGNLENLFLQCPKPTL.QISHIAQQLGLEKDVVRVWFCN | |
Retrocopy | TDNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTL-QISHIAQQLGLEKDVVRVWFCN |
Parental | RRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSV |
RRQKGKRSSSDY.QREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGE.FPPVSV | |
Retrocopy | RRQKGKRSSSDYEQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSV |
Parental | TTLGSPMHSN |
.TLGSPMH.N | |
Retrocopy | ITLGSPMHLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 1 .05 RPM |
SRP007412_cerebellum | 0 .07 RPM | 0 .79 RPM |
SRP007412_heart | 0 .03 RPM | 0 .15 RPM |
SRP007412_kidney | 1 .33 RPM | 0 .76 RPM |
SRP007412_liver | 0 .79 RPM | 0 .26 RPM |
SRP007412_testis | 0 .11 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3294 |