RetrogeneDB ID: | retro_rnor_2968 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:112492456..112493279(-) | ||
Located in intron of: | ENSRNOG00000012787 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pou5f1 | ||
Ensembl ID: | ENSRNOG00000046487 | ||
Aliases: | None | ||
Description: | POU class 5 homeobox 1 [Source:RefSeq peptide;Acc:NP_001009178] |
Percent Identity: | 55.09 % |
Parental protein coverage: | 79.26 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | QVGLGLVPQVGVETLQPEGQAGARVESNSEGASSGPCTARPSAVKLEKVEPSPEESQDMKALQKELEQFA |
..G.G..PQV...TL.PEGQAGARVESNS.GASS..CT.RP.......V.P.PEE.QDMKALQKE.EQFA | |
Retrocopy | EFGVGQLPQVILYTLKPEGQAGARVESNSDGASSEFCTVRPPQWR-RGVKPNPEEFQDMKALQKEVEQFA |
Parental | KLLKQKRITLGYTQADVGLTLG-VLFGKVFSQTTICRFEALQLSLKNMCKLRPLLEKWVEEADNNENLQE |
..LKQK..TLGY.QADVGL.L..V.....F.Q...C.FEA........C.L.PLLE..V....NNE.LQ. | |
Retrocopy | RMLKQKGVTLGYIQADVGLALR<VVSLERFNQMIGCHFEAPL*FGYKKCQL*PLLELRVKKV-NNEILQK |
Parental | ICKSETLVQARKRKRTSIENRV-RWNLENMFLQCPKPSLQQITSIAK-QLGLERDVVR-VWFCNRRQKGK |
..K...L.QA..R.....EN........N.FL.CPKP..QQI..I...QL..E.......WFCN.R.K.K | |
Retrocopy | Y-KVKILMQAHRRNQRRAENHI*KKTPDNIFL*CPKPTVQQISIIHS<QLEVEKVIAQ<MWFCNCR-KSK |
Parental | RSSIEYSQREEYEAAGKPFPGG-AVSFPLPPGPHFGAPGYGSPHFTTLYS-VPFPEGEAFPSVPVTALGS |
RS...YSQ.EE.EA.G..FPGG...SFPLP.GP.FG.P.Y...HFT.LYS.V.F...EAFPSVPVTAL.S | |
Retrocopy | RSN--YSQ*EEDEASGSLFPGG>SLSFPLPSGPSFGGPSYEHTHFTMLYSLVLFQKDEAFPSVPVTALVS |
Parental | PMHSN |
P.HSN | |
Retrocopy | PVHSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |