RetrogeneDB ID: | retro_fcat_1422 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:102223438..102224000(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POU5F1 | ||
Ensembl ID: | ENSFCAG00000001078 | ||
Aliases: | POU5F1, Oct4 | ||
Description: | POU domain, class 5, transcription factor 1 [Source:RefSeq peptide;Acc:NP_001166912] |
Percent Identity: | 65.46 % |
Parental protein coverage: | 52.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | GVLFGKVFSQTTICRFEALQLSFKNMCKLR-PLLQKWVEEADNNE-NLQEICKAETL-VQARKRKRTSIE |
G.L......Q.T.C.F.AL.LSF.N....R..LLQ.WVEEADN.E.NLQ..CKA.TL...A....R.S.E | |
Retrocopy | GSLWDILRPQKTLCHF*ALPLSFQNVYTPR<ALLQNWVEEADNQE<NLQQTCKAGTL<AHAPESRRASME |
Parental | NRVRGNLENMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYSQREDFEAAGSPFSGA |
.RVRG.LE..FL.C.KP..Q...H.AQQLGL..DVV.VWFCN..QKG.RSSSD..Q.E..EAAGSPFSGA | |
Retrocopy | ERVRGSLEDTFLHCWKPSQQHSGHRAQQLGLQQDVVPVWFCNHGQKGNRSSSDCFQGETAEAAGSPFSGA |
Parental | PVSFPLAPGPHFGTPGYG-SPHFTTLYSSVPFPEGEAFP-SVSVTTLGSPMHSN |
PVSF.LAPGPHFGTPG.G..P.FTTLYS.V.FPEGEAFP...SVTTLGSPMHSN | |
Retrocopy | PVSFLLAPGPHFGTPGSG<GPPFTTLYSLVSFPEGEAFP<LGSVTTLGSPMHSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |