RetrogeneDB ID: | retro_fcat_1480 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:44964620..44965106(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSFCAG00000024624 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 89.16 % |
Parental protein coverage: | 83.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPKGKMSAY.FFVQTCREEH.KKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKAD.V. | |
Retrocopy | MAKGDPKKPKGKMSAYTFFVQTCREEH-KKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADRVC |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
.D.EMKDYGPAK.GKKKKDPNAPKRPPSGFFLFCSEF.PKIKSTNPGIS.....K..GEMWNNLSDSEKQ | |
Retrocopy | CDQEMKDYGPAKEGKKKKDPNAPKRPPSGFFLFCSEFHPKIKSTNPGIS--RCGKEAGEMWNNLSDSEKQ |
Parental | PYNNKAAKLKEKYEKDVADYKSKGKF |
PY.NKAAKLK.KYEKDVAD.KSKGKF | |
Retrocopy | PY-NKAAKLKDKYEKDVAD*KSKGKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 5 .62 RPM |
SRP017611_kidney | 0 .10 RPM | 16 .08 RPM |
SRP017611_liver | 0 .20 RPM | 16 .98 RPM |