RetrogeneDB ID: | retro_fcat_865 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:119475162..119475672(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSFCAG00000024624 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 90. % |
Parental protein coverage: | 85.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPKGKMSAYA.FV.T.REEHKKKNPEVPVNFAEFSKKCSERWKTMS.KEKSKFDEMAKADKVR | |
Retrocopy | MAKGDPKKPKGKMSAYAVFV*TFREEHKKKNPEVPVNFAEFSKKCSERWKTMSEKEKSKFDEMAKADKVR |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
YDREMKDYGPAKGGK.KKDP.APKRPPSGF.L.CSEFRPKIKSTNPGISIGDVAKKL.EMW.NLSDSEKQ | |
Retrocopy | YDREMKDYGPAKGGKMKKDPTAPKRPPSGFSLSCSEFRPKIKSTNPGISIGDVAKKLDEMWDNLSDSEKQ |
Parental | PYNNKAAKLKEKYEKDVADYKSKGKFDGAK |
PY..KA..LKEKYEKDV...KSKGKFDGAK | |
Retrocopy | PYDHKAVELKEKYEKDVVECKSKGKFDGAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .08 RPM |
SRP017611_liver | 0 .10 RPM | 16 .98 RPM |