RetrogeneDB ID: | retro_mdom_1958 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | Un:26311504..26311884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSMODG00000006158 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 71.21 % |
Parental protein coverage: | 53.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SLLEKFLIPNASQAESKVFYLKMKGD-YYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIR |
SLL.KF.I.NASQAE..VFYLKM.GD...RYLAEVAAGDDKK..VDQSQ.A.QEAFE.SK....P..P.. | |
Retrocopy | SLLGKFSILNASQAENEVFYLKMEGD<RLRYLAEVAAGDDKKRVVDQSQEADQEAFEVSK----PRPPLT |
Parental | LGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWT |
LGLA.NFSVFY.E.LNSPEK.CSLAKTAF.EA.AELD..SEES.K.ST.IM..LRD..T.WT | |
Retrocopy | LGLAGNFSVFYDEVLNSPEKGCSLAKTAFEEALAELDPGSEESCKESTRIMPPLRDDVTSWT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |