RetrogeneDB ID: | retro_mdom_446 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:589595993..589596371(+) | ||
Located in intron of: | ENSMODG00000008637 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSMODG00000006158 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 69.23 % |
Parental protein coverage: | 52.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | IPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISK-KEMQPTHPIRLGLALNF |
IP.ASQAESKVF..KMK.....YLAE.A.G..KKGIVDQ..Q...E..EISK.K..Q..HP.RLGLALNF | |
Retrocopy | IPKASQAESKVFDWKMKRLLTNYLAENAIGNSKKGIVDQLLQTSEEVSEISK<KDLQSMHPLRLGLALNF |
Parental | SVFYYEILNSPEKACSLAKTAFDEAI-AELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQ |
SV..YE..NS.EKACSLAKTAFDE.I...LDTL..E.YKDSTLIMQLLRD.LTL.TS.TQ | |
Retrocopy | SVVNYE--NSAEKACSLAKTAFDEVI>TKLDTLIKETYKDSTLIMQLLRDSLTLSTSNTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |