RetrogeneDB ID: | retro_mdom_1589 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:62022182..62022583(+) | ||
Located in intron of: | ENSMODG00000007878 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSMODG00000006158 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 75.56 % |
Parental protein coverage: | 54.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ESKVFYLKMKGDYYRY-LAEVAAGDDKKGIVDQSQQAYQEAFEISKK-EMQPTHPIRLGLALNFSVFYYE |
..KVFYLKMKG..Y.Y.LA.V.AGDDKKGIV.Q.QQA.QEAFEISKK.EMQ..HPIRLGL.LNF.V..YE | |
Retrocopy | KQKVFYLKMKGHHYHY>LAKVTAGDDKKGIVTQ*QQAHQEAFEISKK>EMQSNHPIRLGLVLNFFVYFYE |
Parental | ILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
ILN..EKACSLAKTAFDEAIAELD.L.EES.KDSTLIM..LR.NL.LWT.DTQ.DE..A.EG.EN | |
Retrocopy | ILNPLEKACSLAKTAFDEAIAELDVLNEESCKDSTLIM*FLRGNLILWTLDTQRDETKAREGREN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |