RetrogeneDB ID: | retro_mdom_1557 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 5:277325117..277325858(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSMODG00000016200 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 67.47 % |
Parental protein coverage: | 92.4 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | TMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKN-VVGAR-RSSWRVISSIEQ |
TM.K....QK.KLA.QA...DD.A..MKAVTEQG.ELSN.E.NLL.VA.K..VVG...RS..RVISSI.. | |
Retrocopy | TMEKTKMIQKVKLAKQANCSDDKATYMKAVTEQGSELSNKELNLLLVA*KKAVVGGE<RSACRVISSID* |
Parental | KTERSEKKQQMGREYR---EKIEAELQDICNDVLELLDKYLILNATQPESKVFYLKMKGDYFRYLSEVAS |
KT..S.KK.Q....YR...EK.E..L..I...VLELLDK.LI.NAT.PESKVFYLKMKGD.F.YL.EV.. | |
Retrocopy | KTDTSDKKMQLVKDYREKVEKVEYDLRSIGTTVLELLDKFLIINATNPESKVFYLKMKGDSFWYLAEVTC |
Parental | GDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV-FYYEILNSPEKACSLAKTAFDEAIAEL |
GD....T..NSQ.AYQEAF.ISKKEMQPTHPI.LGLALNFSV.FYYEILN.P..A..LAKTAFDEAIAEL | |
Retrocopy | GDDQKQTIDNSQGAYQEAFDISKKEMQPTHPICLGLALNFSV>FYYEILNNPKVA*TLAKTAFDEAIAEL |
Parental | DTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEG |
DTLN..SYKDSTLIM.LLRD.LTLWT....G.E.D..EG | |
Retrocopy | DTLNGDSYKDSTLIMRLLRDKLTLWT*DSTGEECDTAEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 676 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 889 .26 RPM |
SRP007412_heart | 0 .00 RPM | 209 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 516 .20 RPM |
SRP007412_liver | 0 .00 RPM | 207 .44 RPM |
SRP007412_testis | 0 .00 RPM | 168 .54 RPM |