Parental gene:

YWHAQ, ENSCHOG00000004661

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_3413:2206..9154(-)


>ENSCHOG00000004661
GTGGAGAAGACAGAGCTGATCCAGAAAGCAAAGCTGGCTGAGCAGGCTGAATGGTACGATGACATGGCCACCTGCATGAA
GCCCATGGAGCAGGGTGCTGAGCTGTTCAACGAAGAGCACAACCTGCTCTCGTTGGCCTACAACAATGTGGTCAGGGGCA
ACAGGTCCACCTGGAGAGTCATCTTGAGCATGGAGCAGAAGACCAACACCTCTGACAAGAAAGTGCAGCTGATTAAGGAC
TATAAGGAGAACGAGTTGGAGCTGAGATCCATCTGCACCATGGTCCTGGAATTGTTGGATAAATATTTAATAGCCAATGC
AACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGAGATTACTTCCGGTATCTTGCTGAAGTGGCCTGTGGTG
ATGATCGAAAACAAACGATAGATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATGCAACCC
ACACATCCAATCCGCCTGGGGCTGGCTCTTAACTTCTCTGTATTTTACTATGAGATCCTTAATAACCCAGAGCTTGCCTG
TACACTGGCTAAAACGGCTTTTGATGAGGCCATTGCAGAACTTGATACACTGAATGAAGACTCATACAAAGACAGCACCC
TCATCATGCAGTTGCTTAGAGACAACCTAACATTATGGACATCAGACAGTGCAGGAGAAGAATGTGATGCAGCAGAAGGG
GCAGAAAACTAA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002798 within_species_paralog 9 retrogenes
retro_chof_1572, retro_chof_1703, retro_chof_1890, retro_chof_2321, retro_chof_2346, retro_chof_2669, retro_chof_292, retro_chof_315, retro_chof_933,
Choloepus hoffmanni ENSCHOG00000005782 within_species_paralog 15 retrogenes
retro_chof_1049, retro_chof_1325, retro_chof_1630, retro_chof_1670, retro_chof_1975, retro_chof_22, retro_chof_2221, retro_chof_2350, retro_chof_2423, retro_chof_2619, retro_chof_326, retro_chof_352, retro_chof_487, retro_chof_707, retro_chof_971,
Choloepus hoffmanni ENSCHOG00000010861 other_paralog 2 retrogenes
retro_chof_1912, retro_chof_905,
Callithrix jacchus ENSCJAG00000006394 possible_ortholog 2 retrogenes
retro_cjac_2197, retro_cjac_3127,
Monodelphis domestica ENSMODG00000014740 ortholog_one2one 1 retrogene
retro_mdom_1339,
Nomascus leucogenys ENSNLEG00000013534 possible_ortholog 3 retrogenes
retro_nleu_2543, retro_nleu_750, retro_nleu_869,
Rattus norvegicus ENSRNOG00000008104 possible_ortholog 5 retrogenes
retro_rnor_1569, retro_rnor_2065, retro_rnor_2123, retro_rnor_2180, retro_rnor_2746,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_136 70.48 91.77
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2. retro_chof_429 76.71 100.00
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3. retro_chof_481 87.08 97.94
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4. retro_chof_489 91.43 100.00
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5. retro_chof_527 76.76 58.02
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6. retro_chof_863 80.00 64.61
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7. retro_chof_1427 80.11 73.25
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8. retro_chof_1605 90.65 100.00
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9. retro_chof_1835 81.28 94.65
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10. retro_chof_2026 57.39 71.19
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11. retro_chof_2115 91.43 100.00
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12. retro_chof_2134 72.58 74.90
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13. retro_chof_2233 62.86 99.59
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Download FASTA sequences of all ENSCHOG00000004661 retrocopies