RetrogeneDB ID: | retro_mmur_994 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_15250:49100..49606(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMICG00000015668 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 80.7 % |
Parental protein coverage: | 87.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK |
K.PK............CR.EHKKKNPEVP.NFAEFSKK.SERWKTMS.KEKSKFDEMAKADKVRY.REMK | |
Retrocopy | K*PKKQRARCLLMPSLCRKEHKKKNPEVPDNFAEFSKKSSERWKTMSRKEKSKFDEMAKADKVRYNREMK |
Parental | DYGPAKGGKKKKDPNAPK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYITK |
DYGPAK.GKKK.D.NA.K.RPPSG.FLFCSEFRPKIKSTNPGISI.DVAKKLG.MWNNLSDSEKQPYITK | |
Retrocopy | DYGPAKRGKKK-DSNASK<RPPSGSFLFCSEFRPKIKSTNPGISIEDVAKKLGKMWNNLSDSEKQPYITK |
Parental | AAKLKEKYEKXXXXYKSKGKFDGAKGPNKIA |
AAKLKEKYEK.....KSKGKFDGAKGP.K.A | |
Retrocopy | AAKLKEKYEKDVADCKSKGKFDGAKGPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |