RetrogeneDB ID: | retro_mmur_564 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_3873:51501..52013(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMICG00000015668 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 91.33 % |
Parental protein coverage: | 88.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD |
GDPKKPKGKMSAYAFFVQTCREEHKKKNPE.VPVN.AEFSKKCSERWKTMSGKEKSKFDEMAKADK.RYD | |
Retrocopy | GDPKKPKGKMSAYAFFVQTCREEHKKKNPE<VPVNLAEFSKKCSERWKTMSGKEKSKFDEMAKADKARYD |
Parental | REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPY |
REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKS.NPGISIGDVAKK.GEMW.NLSDSEKQPY | |
Retrocopy | REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKPGEMWHNLSDSEKQPY |
Parental | ITKAAKLKEKYEKXXXXYKSKGKFDGAKGPNKI |
ITKAAKLK.KYEK....YKSKGKFDGA..P.K. | |
Retrocopy | ITKAAKLK-KYEKDVADYKSKGKFDGARVPLKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |