RetrogeneDB ID: | retro_mmus_1836 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:51792225..51792599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000097719 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSMUSG00000073702 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632] |
Percent Identity: | 88.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLN |
MAPAKKGG.KKKG.SAINEVVTREYTINIHKRIH.VGFKKRAPRALK.EI.KFAMKEMGTPDV.IDTRLN | |
Retrocopy | MAPAKKGGKKKKGCSAINEVVTREYTINIHKRIHRVGFKKRAPRALK<EIWKFAMKEMGTPDVHIDTRLN |
Parental | KAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
KAVWAKGIRN.PYRIRV.L.RK.NEDE.SP.KLYTLVTY.PVTT.KN.QTVNVDEN | |
Retrocopy | KAVWAKGIRNLPYRIRVCLPRKHNEDEHSPDKLYTLVTYAPVTTIKNVQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 69 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .55 RPM |
SRP007412_heart | 0 .03 RPM | 65 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .00 RPM |
SRP007412_liver | 0 .00 RPM | 55 .14 RPM |
SRP007412_testis | 0 .00 RPM | 58 .23 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_66037 | 179 libraries | 273 libraries | 186 libraries | 145 libraries | 289 libraries |