RetrogeneDB ID: | retro_btau_409 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 11:60015901..60016196(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSBTAG00000019701 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3] |
Percent Identity: | 65.66 % |
Parental protein coverage: | 78.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAM-KEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRL |
.V.R.YTINIH..IH.V..KK.AP.ALKEI.KFA..KE...PDV.IDT.LNKA..AKG.R.VPY.I.V.L | |
Retrocopy | LVMRKYTINIHECIHRVSIKKCAPQALKEIQKFAI>KETECPDVPIDTGLNKALRAKGVRTVPYCICVWL |
Parental | SRKRNEDEDSPNKLYTLVTYVPVTTFKNL |
SRK.NEDEDS.NKL.TLVT.V.V...K.L | |
Retrocopy | SRKHNEDEDSINKLNTLVTQVLVIISKTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 115 .35 RPM |
ERP005899_muscle | 0 .11 RPM | 1167 .11 RPM |
SRP017611_brain | 0 .00 RPM | 110 .00 RPM |
SRP017611_kidney | 0 .06 RPM | 171 .06 RPM |
SRP017611_liver | 0 .00 RPM | 89 .25 RPM |
SRP030211_testis | 0 .09 RPM | 139 .47 RPM |