RetrogeneDB ID: | retro_mmus_592 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:96711836..96712086(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSMUSG00000073702 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632] |
Percent Identity: | 73.81 % |
Parental protein coverage: | 66.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFA-MKEMGTPDVRIDTRLNKAVWAKGIRNVPYR |
SAI..VVT.EYTINIHK.IHGV.FKK..P..LKEI.K.A..KEMGTP.V.IDTRLNKA.WAKGI.N.PY. | |
Retrocopy | SAIDKVVTQEYTINIHKHIHGVCFKKLGPQTLKEIKKIA>TKEMGTPYVHIDTRLNKAIWAKGISNLPYC |
Parental | IRVRLSRKRNEDED |
I.VRLSRK.NE.ED | |
Retrocopy | I*VRLSRKCNEGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 69 .15 RPM |
SRP007412_cerebellum | 0 .30 RPM | 44 .55 RPM |
SRP007412_heart | 0 .00 RPM | 65 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .00 RPM |
SRP007412_liver | 0 .00 RPM | 55 .14 RPM |
SRP007412_testis | 0 .00 RPM | 58 .23 RPM |