RetrogeneDB ID: | retro_mmus_3380 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:111071183..111071554(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000097529 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSMUSG00000073702 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632] |
Percent Identity: | 84.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
.AP..KGGEKK..RSAINE.VTREYTINIHKRIHGVGF.K.A..AL.EIRKFAMKEMGTPDVRIDTRLNK | |
Retrocopy | LAPKEKGGEKKC-RSAINEAVTREYTINIHKRIHGVGFRKHATPALEEIRKFAMKEMGTPDVRIDTRLNK |
Parental | AVWAK-GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
A.WAK.G.RNVPY.I.VRLSRKRNED.DSPNKL.TLVTYVPVT.FKNLQTVNVDEN | |
Retrocopy | AIWAK<GNRNVPYHI*VRLSRKRNED*DSPNKLCTLVTYVPVTAFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 69 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .55 RPM |
SRP007412_heart | 0 .03 RPM | 65 .62 RPM |
SRP007412_kidney | 0 .02 RPM | 77 .00 RPM |
SRP007412_liver | 0 .00 RPM | 55 .14 RPM |
SRP007412_testis | 0 .05 RPM | 58 .23 RPM |