RetrogeneDB ID: | retro_ocun_64 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:102886120..102886498(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026285 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70. % |
Parental protein coverage: | 96. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
.AP..KGG..KK..SAIN.VVT..YTI.IHK.IHGV..KK.AP..LKEI.KFAMKEMGTPDV.IDTRL.K | |
Retrocopy | IAPIMKGGKNKKCHSAINKVVTQKYTISIHKHIHGVSSKKHAPGTLKEIWKFAMKEMGTPDVHIDTRLSK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV |
AVWAKGI.N..Y.IR.RL.RK.NE.ED.PNKL.TLVTY..VTT.KNL... | |
Retrocopy | AVWAKGISNIQYHIRMRLFRKHNENEDFPNKLCTLVTYISVTTLKNLESM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .07 RPM |
SRP017611_liver | 0 .00 RPM | 19 .35 RPM |