RetrogeneDB ID: | retro_ocun_1070 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:149529350..149529705(+) | ||
Located in intron of: | ENSOCUG00000007249 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.59 % |
Parental protein coverage: | 94.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAV |
PAKKGGEKK.GR.AINE.VTRE.TI.IHK.IH.VGFKK.AP.A.....KFAMKEMGTPDV..DTRL.KAV | |
Retrocopy | PAKKGGEKKNGRFAINEMVTRESTIDIHKCIHAVGFKKCAPWARTDVQKFAMKEMGTPDVCTDTRLRKAV |
Parental | WAKGIRNVPYRIRVRLSR-KRNEDEDSPNKLYTLVTYVPVTTFKNLQTV |
WA.GI.NV.YR...RLSR.KRNED...PNKL.TLVT.V...TFK.LQ.. | |
Retrocopy | WANGIKNVLYRFHMRLSR>KRNEDAGWPNKLSTLVTCVHAITFKSLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .07 RPM |
SRP017611_liver | 0 .00 RPM | 19 .35 RPM |