Parental gene:

RPL31, ENSBTAG00000019701

Aliases:None
Description:60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3]
Organism:Cow (Bos taurus)
Coordinates:11:6003174..6008528(+)


>ENSBTAG00000019701
ATGGCTCCCGCAAAGAAGGGCGGCGAGAAGAAGAAGGGCCGGTCCGCCATCAACGAGGTGGTGACAAGAGAATACACCAT
CAACATTCACAAGCGCATCCATGGAGTGGGTTTCAAGAAGCGTGCCCCTAGGGCACTCAAAGAAATCCGGAAGTTTGCCA
TGAAGGAGATGGGAACCCCAGATGTGCGCATCGACACCAGGCTCAACAAAGCCGTCTGGGCCAAAGGGATCAGGAATGTC
CCATACCGGATCCGTGTGCGGTTGTCCAGAAAACGTAATGAAGACGAAGACTCGCCAAACAAGCTCTATACTTTGGTTAC
CTACGTGCCCGTCACCACCTTCAAAAATCTACAGACAGTCAATGTGGATGAGAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 110 .00 RPM
SRP017611_kidney 171 .06 RPM
SRP017611_liver 89 .25 RPM
ERP005899_muscle 1167 .11 RPM
ERP005899_liver 115 .35 RPM
SRP030211_testis 139 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007914 possible_ortholog 1 retrogene
retro_acar_168,
Latimeria chalumnae ENSLACG00000013603 ortholog_one2many 1 retrogene
retro_lcha_94,
Macropus eugenii ENSMEUG00000000963 ortholog_one2many 8 retrogenes
retro_meug_1083, retro_meug_1433, retro_meug_1731, retro_meug_1741, retro_meug_198, retro_meug_418, retro_meug_588, retro_meug_649,
Microcebus murinus ENSMICG00000016059 possible_ortholog 15 retrogenes
retro_mmur_1018, retro_mmur_1028, retro_mmur_1080, retro_mmur_130, retro_mmur_1320, retro_mmur_1369, retro_mmur_1386, retro_mmur_1606, retro_mmur_1617, retro_mmur_476, retro_mmur_506, retro_mmur_538, retro_mmur_639, retro_mmur_796, retro_mmur_996,
Myotis lucifugus ENSMLUG00000002507 possible_ortholog 21 retrogenes
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Monodelphis domestica ENSMODG00000001704 possible_ortholog 5 retrogenes
retro_mdom_1052, retro_mdom_1464, retro_mdom_1674, retro_mdom_1720, retro_mdom_1818,
Mus musculus ENSMUSG00000073702 possible_ortholog 41 retrogenes
retro_mmus_1054, retro_mmus_1143, retro_mmus_1256, retro_mmus_1419, retro_mmus_1456, retro_mmus_1495, retro_mmus_1507, retro_mmus_1532, retro_mmus_1598, retro_mmus_1670, retro_mmus_1674, retro_mmus_1768, retro_mmus_1823, retro_mmus_1836, retro_mmus_1856, retro_mmus_2054, retro_mmus_2152, retro_mmus_2240, retro_mmus_2278, retro_mmus_2398, retro_mmus_2554, retro_mmus_2603, retro_mmus_2620, retro_mmus_2630, retro_mmus_2658, retro_mmus_2677, retro_mmus_2716, retro_mmus_2821, retro_mmus_2959, retro_mmus_2966, retro_mmus_3186, retro_mmus_3196, retro_mmus_3380, retro_mmus_367, retro_mmus_396, retro_mmus_446, retro_mmus_453, retro_mmus_485, retro_mmus_592, retro_mmus_933, retro_mmus_964,
Oryctolagus cuniculus ENSOCUG00000002392 possible_ortholog 9 retrogenes
retro_ocun_1070, retro_ocun_1074, retro_ocun_1161, retro_ocun_117, retro_ocun_1366, retro_ocun_206, retro_ocun_64, retro_ocun_941, retro_ocun_99,
Sarcophilus harrisii ENSSHAG00000011706 possible_ortholog 3 retrogenes
retro_shar_190, retro_shar_285, retro_shar_721,
Ictidomys tridecemlineatus ENSSTOG00000010902 ortholog_one2one 15 retrogenes
retro_itri_1068, retro_itri_1074, retro_itri_1077, retro_itri_1140, retro_itri_1142, retro_itri_1223, retro_itri_1467, retro_itri_1570, retro_itri_1634, retro_itri_1791, retro_itri_1900, retro_itri_298, retro_itri_450, retro_itri_680, retro_itri_76,
Tarsius syrichta ENSTSYG00000005427 ortholog_one2one 33 retrogenes
retro_tsyr_1102, retro_tsyr_117, retro_tsyr_1211, retro_tsyr_1535, retro_tsyr_1610, retro_tsyr_1692, retro_tsyr_1861, retro_tsyr_1912, retro_tsyr_1947, retro_tsyr_2001, retro_tsyr_2026, retro_tsyr_2030, retro_tsyr_2079, retro_tsyr_2089, retro_tsyr_2092, retro_tsyr_2100, retro_tsyr_2105, retro_tsyr_2162, retro_tsyr_239, retro_tsyr_294, retro_tsyr_485, retro_tsyr_551, retro_tsyr_596, retro_tsyr_617, retro_tsyr_635, retro_tsyr_666, retro_tsyr_712, retro_tsyr_754, retro_tsyr_766, retro_tsyr_780, retro_tsyr_785, retro_tsyr_813, retro_tsyr_909,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_160 88.00 100.00
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2. retro_btau_409 65.66 78.40
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3. retro_btau_524 68.00 99.20
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4. retro_btau_867 71.79 92.80
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5. retro_btau_1043 70.64 86.40
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6. retro_btau_1100 70.79 71.20
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7. retro_btau_1553 75.00 76.00
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8. retro_btau_1777 59.32 94.40
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9. retro_btau_1783 63.20 100.00
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Download FASTA sequences of all ENSBTAG00000019701 retrocopies