RetrogeneDB ID: | retro_btau_1043 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 24:28411142..28411456(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSBTAG00000019701 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3] |
Percent Identity: | 70.64 % |
Parental protein coverage: | 86.4 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRI-HGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLN |
MAP....G.K..G.SAINEV.TREYTINIHK.I.H.VGFKK.AP.ALKEI.KFAMKE.GTPD..ID.RL. | |
Retrocopy | MAPTARSGDKN-GQSAINEVLTREYTINIHKCI<H*VGFKKCAPQALKEIWKFAMKEIGTPDLSIDPRLH |
Parental | KAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY |
KAVWAKGIRNVP..I..RLS....ED...PNKLY.LVTY | |
Retrocopy | KAVWAKGIRNVP*HIHARLS--EDED*ELPNKLYSLVTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 115 .35 RPM |
ERP005899_muscle | 0 .00 RPM | 1167 .11 RPM |
SRP017611_brain | 0 .00 RPM | 110 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .06 RPM |
SRP017611_liver | 0 .00 RPM | 89 .25 RPM |
SRP030211_testis | 0 .00 RPM | 139 .47 RPM |