RetrogeneDB ID: | retro_btau_1553 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:1387750..1388028(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSBTAG00000019701 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3] |
Percent Identity: | 75. % |
Parental protein coverage: | 76. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRN |
E.T..IHK.IHGVGF.KRAP.ALKEI.K.AMKEMGTPDV.IDT..NK..WAKGIRNVPYRI.V.LS.K.N | |
Retrocopy | ENTLDIHKHIHGVGF*KRAP*ALKEIQKVAMKEMGTPDVCIDTKFNKVAWAKGIRNVPYRICVWLS*KYN |
Parental | EDEDSPNKLYTLVTYVPVTT-FKNLQ |
..EDSP.KLY..VT.VPVTT.FKNLQ | |
Retrocopy | --EDSPEKLYMFVTHVPVTT<FKNLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 115 .35 RPM |
ERP005899_muscle | 0 .11 RPM | 1167 .11 RPM |
SRP017611_brain | 0 .05 RPM | 110 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .06 RPM |
SRP017611_liver | 0 .00 RPM | 89 .25 RPM |
SRP030211_testis | 0 .03 RPM | 139 .47 RPM |