RetrogeneDB ID: | retro_btau_1100 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 26:17847097..17847361(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSBTAG00000019701 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3] |
Percent Identity: | 70.79 % |
Parental protein coverage: | 71.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAP.KKGGEKKKG..AIN.V.T..YTINIHK.I.G.G.KK.APRAL.E..KFAMKEMG...V.IDTRLN. | |
Retrocopy | MAPTKKGGEKKKG*PAINGV-TK*YTINIHKLILGAGSKKCAPRALRET*KFAMKEMGALGVHIDTRLNS |
Parental | AVWAKGIRNVPYRIRVRLS |
.VWA.GIRN.PY.I.V.LS | |
Retrocopy | PVWASGIRNAPYPICVHLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 115 .35 RPM |
ERP005899_muscle | 0 .05 RPM | 1167 .11 RPM |
SRP017611_brain | 0 .05 RPM | 110 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .06 RPM |
SRP017611_liver | 0 .00 RPM | 89 .25 RPM |
SRP030211_testis | 0 .00 RPM | 139 .47 RPM |