RetrogeneDB ID: | retro_mmus_2554 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:25710256..25710588(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSMUSG00000073702 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632] |
Percent Identity: | 71.3 % |
Parental protein coverage: | 89.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYR |
R.AINEVVT.EYTINIHKRIHGVGFKK.AP...KEI.KFAMKEM.TP.V.IDTRLNKA.W.KGIRN.P.. | |
Retrocopy | RRAINEVVTQEYTINIHKRIHGVGFKKHAPWTIKEIQKFAMKEMVTPGVHIDTRLNKAIWVKGIRNAPSH |
Parental | IRVRLSR-KRNEDEDSPNKLYTLVTY-VPVTTFK-NLQTVNVDEN |
...........E.E.SPNKLYTL.TY..PVTTFK..LQTVNVDEN | |
Retrocopy | LSMFVQN>HNKEEE-SPNKLYTLITY<LPVTTFK<TLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 69 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .55 RPM |
SRP007412_heart | 0 .03 RPM | 65 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .00 RPM |
SRP007412_liver | 0 .00 RPM | 55 .14 RPM |
SRP007412_testis | 0 .18 RPM | 58 .23 RPM |