RetrogeneDB ID: | retro_ocun_941 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:39877421..39877764(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.52 % |
Parental protein coverage: | 92. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPR-ALKEIRKFAMKEMGTPDVRIDT-RLNK |
PA.KGGEKKKG.S....VVTRE.TI.IHK.IHG...K..AP..AL.EI.KF.MKEMGTP.V..DT...NK | |
Retrocopy | PAEKGGEKKKGCSTTTDVVTRECTIDIHKHIHGMSCKTCAPG<ALREIQKFSMKEMGTPCVHMDT<HPNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL |
AVWA.GIR..PY.I..RLSRK.NEDED.P.KL..LVT.VPVT.FKNL | |
Retrocopy | AVWAEGIRDIPYCIHMRLSRKHNEDEDWPKKLCMLVTFVPVTAFKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .07 RPM |
SRP017611_liver | 0 .00 RPM | 19 .35 RPM |