RetrogeneDB ID: | retro_mmus_2658 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:83040656..83041006(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSMUSG00000073702 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632] |
Percent Identity: | 82.2 % |
Parental protein coverage: | 93.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAP.KKGGEKKKGRSAINE.VT.EYTINI...IHGVGFKK.AP.AL.EIRKF..K.MGTPDV...TRLNK | |
Retrocopy | MAPTKKGGEKKKGRSAINELVT*EYTINIQEHIHGVGFKKHAPWALREIRKFDVKGMGTPDVSTNTRLNK |
Parental | AVWAK-GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL |
AVWA..GIRNVPY.IRVRLSRK.NE.ED.PNKLYTLVTYVPVTTFKNL | |
Retrocopy | AVWAR<GIRNVPYHIRVRLSRKCNEYEDLPNKLYTLVTYVPVTTFKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 69 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .55 RPM |
SRP007412_heart | 0 .00 RPM | 65 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .00 RPM |
SRP007412_liver | 0 .00 RPM | 55 .14 RPM |
SRP007412_testis | 0 .00 RPM | 58 .23 RPM |