RetrogeneDB ID: | retro_ocun_1074 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:168209841..168210213(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPA-KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAM-KEMGT-PDVRIDTR |
MAPA.K.G.....G.......VT...TI.IHK.IHG.GFK..A.RALKEI.KFA..K..G..P.V..... | |
Retrocopy | MAPA<KEGWWEEEGPFC--HLVTQGHTIDIHKLIHGMGFKQCAFRALKEIWKFAL>KRWGLQPAVPFVAK |
Parental | LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
.NKAVWAKGIR.VPY.I.VRLSRK.NE.EDSPNKLYTLV.YV.V..FKNLQTVN.DEN | |
Retrocopy | FNKAVWAKGIRSVPY*ICVRLSRKCNENEDSPNKLYTLVIYVHVISFKNLQTVNMDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .07 RPM |
SRP017611_liver | 0 .00 RPM | 19 .35 RPM |