RetrogeneDB ID: | retro_mmus_1524 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:64917981..64919090(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actg1 | ||
Ensembl ID: | ENSMUSG00000062825 | ||
Aliases: | Actg1, AL023024, Actg, Actl, E51 | ||
Description: | actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906] |
Percent Identity: | 96.5 % |
Parental protein coverage: | 98.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ-GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG |
A.LVIDNGSGMCKAGFAG.DAPRAVFPSIVGRPRH..GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG | |
Retrocopy | ASLVIDNGSGMCKAGFAGNDAPRAVFPSIVGRPRHR<GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG |
Parental | IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA |
IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP.MYVAIQAVLSLYA | |
Retrocopy | IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPGMYVAIQAVLSLYA |
Parental | SGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE |
SGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG.DLTDYLMKILTE.GYSFTTTAEREIV..IKE | |
Retrocopy | SGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGGDLTDYLMKILTEWGYSFTTTAEREIVHYIKE |
Parental | KLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK |
KLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK | |
Retrocopy | KLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK |
Parental | CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ |
CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII.PPERKYSVWIGGSILASLSTFQQ | |
Retrocopy | CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIITPPERKYSVWIGGSILASLSTFQQ |
Parental | MWISKQEYDESGPSIVHRKCF |
MWI.KQEYDESGP..VHRKCF | |
Retrocopy | MWINKQEYDESGPTSVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .72 RPM | 87 .12 RPM |
SRP007412_cerebellum | 0 .35 RPM | 43 .55 RPM |
SRP007412_heart | 0 .06 RPM | 49 .59 RPM |
SRP007412_kidney | 0 .21 RPM | 94 .88 RPM |
SRP007412_liver | 0 .00 RPM | 11 .31 RPM |
SRP007412_testis | 0 .46 RPM | 97 .38 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_48565 | 22 libraries | 2 libraries | 139 libraries | 238 libraries | 671 libraries |