RetrogeneDB ID: | retro_shar_350 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841424.1:952843..953092(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSSHAG00000013969 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 77.11 % |
Parental protein coverage: | 85.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRNGFREGTTP |
T.TLC..CGSKAYHLQ..TCGKCGYPAK.KRK.NWSAKAK...TTGTG.MRHLKI.Y..FRNGF.E..TP | |
Retrocopy | TYTLCYKCGSKAYHLQMLTCGKCGYPAKHKRKSNWSAKAKQCDTTGTGQMRHLKIIYCGFRNGFYEVVTP |
Parental | KPKRAAVAASSSS |
K.KR.AVAASSSS | |
Retrocopy | KFKRVAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005142 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000007388 | 10 retrocopies | |
Latimeria chalumnae | ENSLACG00000002787 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000030052 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000023807 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020301 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016508 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000034300 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000012538 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013969 | 4 retrocopies |