RetrogeneDB ID: | retro_shar_395 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841589.1:2505882..2506148(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSSHAG00000013969 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 78.89 % |
Parental protein coverage: | 91.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRNGF |
GK.RNKTHTLC.R.GSKAYHL.KS.CGKC.Y.AK.KRKYNWS.KAKRRN.TGTG.MRH.KIV...FRNGF | |
Retrocopy | GKSRNKTHTLCHRYGSKAYHLHKS*CGKCDYAAKCKRKYNWSGKAKRRNATGTG*MRHSKIVCCCFRNGF |
Parental | REGTTPKPK-RAAVAASSSS |
.EGTT.KPK.RAA.AASSSS | |
Retrocopy | YEGTTAKPK<RAAAAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005142 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000007388 | 10 retrocopies | |
Latimeria chalumnae | ENSLACG00000002787 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000030052 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000023807 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020301 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016508 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000034300 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000012538 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013969 | 4 retrocopies |