RetrogeneDB ID: | retro_mmul_997 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:84133810..84134098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9675 | ||
Ensembl ID: | ENSMMUG00000023807 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
M.KG.S.F....N..HTL...CGSK.YHL.K...GKCGYP.K.KR.YN..AKAKR.NTTG...MRHLKI. | |
Retrocopy | MRKGMSAFRSHHNRRHTLYHHCGSKCYHLHKTSYGKCGYPDKHKR*YNHYAKAKRQNTTGICQMRHLKIL |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
Y.RF...F.EG.T.KPK.AAVAASSSS | |
Retrocopy | YCRFKNIFCEG-THKPKKAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .51 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 109 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .50 RPM |
SRP007412_heart | 0 .00 RPM | 31 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .89 RPM |
SRP007412_liver | 0 .00 RPM | 55 .85 RPM |
SRP007412_testis | 0 .00 RPM | 13 .12 RPM |