RetrogeneDB ID: | retro_mdom_942 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:524935115..524935300(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000020301 | ||
Aliases: | None | ||
Description: | Ribosomal protein L37 [Source:UniProtKB/TrEMBL;Acc:F7BFG9] |
Percent Identity: | 68.25 % |
Parental protein coverage: | 63.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFR-NGFREGTTPKPKRAAVAASSSS |
K.GYPAK.K.KYNWS.KAKR..TTG.G.MRHLK.....FR.NGF.EG.TPKPKR.A..A.SSS | |
Retrocopy | KGGYPAKGKKKYNWSTKAKRCSTTGSGQMRHLKNFHC*FR<NGFHEGITPKPKRKAIVAPSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |