RetrogeneDB ID:

retro_lafr_532

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_2:56369643..56369931(-)
Located in intron of:ENSLAFG00000006669
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37
Ensembl ID:ENSLAFG00000030052
Aliases:None
Description:Ribosomal protein L37 [Source:UniProtKB/TrEMBL;Acc:G3U3B7]


Retrocopy-Parental alignment summary:






>retro_lafr_532
ACGAAAGGAACGTTATCATTTGGAAAGTGTCATAATAAGATGCACATGTTGTGCAGCCACCGTGCCTCTAAGGCCTACCA
CCTTCAGAAGTCGACGTGTGGCAAATGTGGCTACCTTTCTGAGCGCAAGAGAAAATATAACTGGGGTGTCAAGGCTGAAA
GACGAAATACCACTGGTACTAGCCAGATAAGTCACCAAAAAATTGTATACCACAGATTCAAGCATGGATTCCATGAAGGA
ACAACAGCTAAACCCAAGAGGGCAGCTCTTGCAGCATCCAGTTCATCT

ORF - retro_lafr_532 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.96 %
Parental protein coverage: 98.97 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVY
TKGT.SFGK..NK.H.LC....SKAYHLQKSTCGKCGY...RKRKYNW..KA.RRNTTGT....H.KIVY
RetrocopyTKGTLSFGKCHNKMHMLCSHRASKAYHLQKSTCGKCGYLSERKRKYNWGVKAERRNTTGTSQISHQKIVY
ParentalRRFRHGFREGTTPKPKRAAVAASSSS
.RF.HGF.EGTT.KPKRAA.AASSSS
RetrocopyHRFKHGFHEGTTAKPKRAALAASSSS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_532 was not experimentally validated.

Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 181 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000051426 retrocopies
Callithrix jacchus ENSCJAG0000000738810 retrocopies
Homo sapiens ENSG0000014559221 retrocopies
Latimeria chalumnae ENSLACG000000027871 retrocopy
Loxodonta africana ENSLAFG00000030052 13 retrocopies
Myotis lucifugus ENSMLUG0000000156510 retrocopies
Macaca mulatta ENSMMUG000000238076 retrocopies
Monodelphis domestica ENSMODG000000203013 retrocopies
Mus musculus ENSMUSG0000004184128 retrocopies
Nomascus leucogenys ENSNLEG000000165084 retrocopies
Oryctolagus cuniculus ENSOCUG0000002967411 retrocopies
Otolemur garnettii ENSOGAG000000343007 retrocopies
Pongo abelii ENSPPYG0000001542226 retrocopies
Pan troglodytes ENSPTRG0000001682220 retrocopies
Rattus norvegicus ENSRNOG000000125386 retrocopies
Sarcophilus harrisii ENSSHAG000000139694 retrocopies
Sus scrofa ENSSSCG000000258835 retrocopies



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