Parental gene:

rpl37 (2 of 2), ENSLACG00000002787

Aliases:None
Description:ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH129246.1:59598..67785(+)


>ENSLACG00000002787
ATGACGAAGGGAACATCGTCATTTGGTAAGCGTCGCAATAAGACGCACACTCTTTGCCGGCGTTGTGGATCTAAGGCATA
CCATCTCCAGAAAGCCACTTGTGGCAAATGTGGTTACCCTGCCAAGCGTAAGAGAAAGTACAACTGGAGCGCTAAGGCCA
AGAGACGCAACACCACTGGAACTGGCCGTATGAGACACTTGAAAGTTGTGTATCGCAGATTCAGGAATGGATTCCGCGAG
GGAACAACGCCTAAGCCCAAGAGAGCTGCAGTTGCAGCTTCTAGTTCTTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 477 .70 RPM
DRP000627_kidney 260 .56 RPM
DRP000627_pelvic_fin 565 .12 RPM
DRP000627_pharynx 167 .51 RPM
DRP000627_gill 296 .70 RPM
DRP000627_tail_muscle 112 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015424 possible_ortholog 14 retrogenes
retro_amel_1101, retro_amel_1370, retro_amel_1461, retro_amel_1603, retro_amel_167, retro_amel_181, retro_amel_1824, retro_amel_207, retro_amel_237, retro_amel_277, retro_amel_701, retro_amel_888, retro_amel_910, retro_amel_916,
Bos taurus ENSBTAG00000005142 possible_ortholog 6 retrogenes
retro_btau_1430, retro_btau_1502, retro_btau_1575, retro_btau_1670, retro_btau_181, retro_btau_243,
Callithrix jacchus ENSCJAG00000007388 possible_ortholog 10 retrogenes
retro_cjac_107, retro_cjac_1443, retro_cjac_169, retro_cjac_2091, retro_cjac_2443, retro_cjac_247, retro_cjac_2495, retro_cjac_2654, retro_cjac_2956, retro_cjac_332,
Equus caballus ENSECAG00000026905 possible_ortholog 5 retrogenes
retro_ecab_323, retro_ecab_354, retro_ecab_411, retro_ecab_420, retro_ecab_896,
Echinops telfairi ENSETEG00000003463 possible_ortholog 23 retrogenes
retro_etel_1003, retro_etel_1030, retro_etel_118, retro_etel_1195, retro_etel_1317, retro_etel_132, retro_etel_1414, retro_etel_1506, retro_etel_1664, retro_etel_1717, retro_etel_1832, retro_etel_1920, retro_etel_201, retro_etel_300, retro_etel_311, retro_etel_360, retro_etel_484, retro_etel_501, retro_etel_572, retro_etel_66, retro_etel_727, retro_etel_732, retro_etel_763,
Homo sapiens ENSG00000145592 possible_ortholog 21 retrogenes
retro_hsap_1277, retro_hsap_1424, retro_hsap_156, retro_hsap_1747, retro_hsap_1763, retro_hsap_2009, retro_hsap_2120, retro_hsap_2239, retro_hsap_2265, retro_hsap_2499, retro_hsap_2515, retro_hsap_2923, retro_hsap_343, retro_hsap_3610, retro_hsap_3901, retro_hsap_3958, retro_hsap_4685, retro_hsap_537, retro_hsap_795, retro_hsap_887, retro_hsap_953,
Gorilla gorilla ENSGGOG00000003241 possible_ortholog 19 retrogenes
retro_ggor_1002, retro_ggor_1100, retro_ggor_1452, retro_ggor_1488, retro_ggor_1558, retro_ggor_1643, retro_ggor_1670, retro_ggor_2025, retro_ggor_2169, retro_ggor_2246, retro_ggor_2256, retro_ggor_2436, retro_ggor_2629, retro_ggor_2660, retro_ggor_2909, retro_ggor_362, retro_ggor_490, retro_ggor_718, retro_ggor_769,
Loxodonta africana ENSLAFG00000030052 possible_ortholog 13 retrogenes
retro_lafr_1101, retro_lafr_1123, retro_lafr_1125, retro_lafr_1136, retro_lafr_215, retro_lafr_374, retro_lafr_448, retro_lafr_507, retro_lafr_532, retro_lafr_619, retro_lafr_775, retro_lafr_985, retro_lafr_986,
Macropus eugenii ENSMEUG00000011938 possible_ortholog 3 retrogenes
retro_meug_1060, retro_meug_1633, retro_meug_255,
Myotis lucifugus ENSMLUG00000001565 possible_ortholog 10 retrogenes
retro_mluc_1037, retro_mluc_1334, retro_mluc_1441, retro_mluc_1651, retro_mluc_1897, retro_mluc_1917, retro_mluc_2006, retro_mluc_454, retro_mluc_738, retro_mluc_959,
Macaca mulatta ENSMMUG00000023807 possible_ortholog 6 retrogenes
retro_mmul_1602, retro_mmul_1672, retro_mmul_206, retro_mmul_329, retro_mmul_976, retro_mmul_997,
Monodelphis domestica ENSMODG00000020301 possible_ortholog 3 retrogenes
retro_mdom_130, retro_mdom_1843, retro_mdom_942,
Mus musculus ENSMUSG00000041841 possible_ortholog 28 retrogenes
retro_mmus_1333, retro_mmus_1360, retro_mmus_1425, retro_mmus_1560, retro_mmus_1717, retro_mmus_1732, retro_mmus_1804, retro_mmus_1813, retro_mmus_2067, retro_mmus_2379, retro_mmus_2385, retro_mmus_2513, retro_mmus_2559, retro_mmus_2575, retro_mmus_2691, retro_mmus_2811, retro_mmus_2838, retro_mmus_3090, retro_mmus_3222, retro_mmus_3343, retro_mmus_3345, retro_mmus_3364, retro_mmus_3455, retro_mmus_3493, retro_mmus_3503, retro_mmus_3504, retro_mmus_3674, retro_mmus_438,
Nomascus leucogenys ENSNLEG00000016508 possible_ortholog 4 retrogenes
retro_nleu_1841, retro_nleu_2065, retro_nleu_2407, retro_nleu_77,
Oryctolagus cuniculus ENSOCUG00000029674 possible_ortholog 11 retrogenes
retro_ocun_1063, retro_ocun_1269, retro_ocun_1476, retro_ocun_1491, retro_ocun_1514, retro_ocun_1870, retro_ocun_295, retro_ocun_683, retro_ocun_771, retro_ocun_879, retro_ocun_956,
Otolemur garnettii ENSOGAG00000034300 possible_ortholog 7 retrogenes
retro_ogar_127, retro_ogar_1308, retro_ogar_1662, retro_ogar_1667, retro_ogar_2670, retro_ogar_662, retro_ogar_76,
Procavia capensis ENSPCAG00000007672 possible_ortholog 5 retrogenes
retro_pcap_252, retro_pcap_270, retro_pcap_349, retro_pcap_436, retro_pcap_53,
Pongo abelii ENSPPYG00000015422 possible_ortholog 26 retrogenes
retro_pabe_1058, retro_pabe_1180, retro_pabe_1443, retro_pabe_1532, retro_pabe_1643, retro_pabe_1705, retro_pabe_1756, retro_pabe_1840, retro_pabe_1851, retro_pabe_1865, retro_pabe_1951, retro_pabe_1967, retro_pabe_1985, retro_pabe_212, retro_pabe_2403, retro_pabe_2432, retro_pabe_2962, retro_pabe_3180, retro_pabe_3260, retro_pabe_353, retro_pabe_3549, retro_pabe_3638, retro_pabe_466, retro_pabe_634, retro_pabe_707, retro_pabe_813,
Pan troglodytes ENSPTRG00000016822 possible_ortholog 20 retrogenes
retro_ptro_1208, retro_ptro_1219, retro_ptro_1338, retro_ptro_1451, retro_ptro_1460, retro_ptro_152, retro_ptro_1552, retro_ptro_1584, retro_ptro_1605, retro_ptro_1978, retro_ptro_2440, retro_ptro_2654, retro_ptro_2687, retro_ptro_273, retro_ptro_403, retro_ptro_553, retro_ptro_613, retro_ptro_660, retro_ptro_873, retro_ptro_974,
Pteropus vampyrus ENSPVAG00000000921 possible_ortholog 8 retrogenes
retro_pvam_1048, retro_pvam_1070, retro_pvam_1478, retro_pvam_315, retro_pvam_49, retro_pvam_738, retro_pvam_803, retro_pvam_844,
Rattus norvegicus ENSRNOG00000012538 possible_ortholog 6 retrogenes
retro_rnor_171, retro_rnor_181, retro_rnor_220, retro_rnor_246, retro_rnor_321, retro_rnor_325,
Sarcophilus harrisii ENSSHAG00000013969 possible_ortholog 4 retrogenes
retro_shar_295, retro_shar_350, retro_shar_395, retro_shar_715,
Sus scrofa ENSSSCG00000025883 possible_ortholog 5 retrogenes
retro_sscr_1004, retro_sscr_1220, retro_sscr_1221, retro_sscr_767, retro_sscr_872,
Tarsius syrichta ENSTSYG00000006208 possible_ortholog 21 retrogenes
retro_tsyr_1113, retro_tsyr_1206, retro_tsyr_144, retro_tsyr_1722, retro_tsyr_1893, retro_tsyr_1969, retro_tsyr_201, retro_tsyr_216, retro_tsyr_296, retro_tsyr_307, retro_tsyr_324, retro_tsyr_356, retro_tsyr_426, retro_tsyr_53, retro_tsyr_572, retro_tsyr_682, retro_tsyr_744, retro_tsyr_783, retro_tsyr_829, retro_tsyr_86, retro_tsyr_914,
Tursiops truncatus ENSTTRG00000010926 possible_ortholog 7 retrogenes
retro_ttru_1712, retro_ttru_1905, retro_ttru_191, retro_ttru_242, retro_ttru_425, retro_ttru_828, retro_ttru_970,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_6 82.29 100.00
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Download FASTA sequences of all ENSLACG00000002787 retrocopies