RetrogeneDB ID: | retro_cjac_247 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:6071871..6072165(+) | ||
Located in intron of: | ENSCJAG00000012635 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022800 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSCJAG00000007388 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 88.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
MTKGTS.FGKR.NK.H.LCRRCGS.A.HLQKST.GKCG.PAKRKRKYNWSAKAKRRNT.GTGRMRH.K.V | |
Retrocopy | MTKGTSRFGKRCNKMHALCRRCGSRACHLQKSTRGKCGCPAKRKRKYNWSAKAKRRNTAGTGRMRHPKSV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
YRRFRHGFREGTTPKPKRAAVAASSSS | |
Retrocopy | YRRFRHGFREGTTPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .18 RPM | 80 .81 RPM |
SRP051959_heart | 0 .11 RPM | 63 .02 RPM |
SRP051959_kidney | 0 .35 RPM | 67 .29 RPM |
SRP051959_liver | 0 .82 RPM | 119 .20 RPM |
SRP051959_lung | 3 .90 RPM | 89 .99 RPM |
SRP051959_lymph_node | 8 .81 RPM | 146 .30 RPM |
SRP051959_skeletal_muscle | 0 .09 RPM | 83 .77 RPM |
SRP051959_spleen | 2 .23 RPM | 117 .37 RPM |