RetrogeneDB ID: | retro_btau_181 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:16325797..16326091(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000016391 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSBTAG00000005142 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L37 [Source:UniProtKB/Swiss-Prot;Acc:P79244] |
Percent Identity: | 97.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
MTKGTSSFGKRRNKTHTLC.RCGSKAYHLQKSTCGKC.YPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV | |
Retrocopy | MTKGTSSFGKRRNKTHTLCHRCGSKAYHLQKSTCGKCDYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
YRRFRHGFREGTTPKPKRAAVAASSSS | |
Retrocopy | YRRFRHGFREGTTPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 5 .05 RPM | 74 .98 RPM |
ERP005899_muscle | 3 .38 RPM | 610 .98 RPM |
SRP017611_brain | 0 .32 RPM | 61 .35 RPM |
SRP017611_kidney | 1 .48 RPM | 98 .21 RPM |
SRP017611_liver | 0 .60 RPM | 73 .62 RPM |
SRP030211_testis | 0 .53 RPM | 64 .89 RPM |