RetrogeneDB ID: | retro_cjac_2443 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:58184364..58184655(-) | ||
Located in intron of: | ENSCJAG00000010349 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSCJAG00000007388 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 94.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
MTKGTS.FGKRRNK.H.LCRRCGSKAYHLQKSTCGKCGYPAKRKRK.NWSAKAKRRNTTGTGRMRHLKIV | |
Retrocopy | MTKGTSLFGKRRNKMHMLCRRCGSKAYHLQKSTCGKCGYPAKRKRKNNWSAKAKRRNTTGTGRMRHLKIV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
YRRF.HGFREGTTPKPKRAAVAASSSS | |
Retrocopy | YRRFGHGFREGTTPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .95 RPM | 80 .81 RPM |
SRP051959_heart | 1 .02 RPM | 63 .02 RPM |
SRP051959_kidney | 0 .80 RPM | 67 .29 RPM |
SRP051959_liver | 0 .58 RPM | 119 .20 RPM |
SRP051959_lung | 0 .99 RPM | 89 .99 RPM |
SRP051959_lymph_node | 0 .71 RPM | 146 .30 RPM |
SRP051959_skeletal_muscle | 1 .46 RPM | 83 .77 RPM |
SRP051959_spleen | 0 .92 RPM | 117 .37 RPM |