RetrogeneDB ID: | retro_mmul_1602 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:29023813..29024103(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000021427 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9675 | ||
Ensembl ID: | ENSMMUG00000023807 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK-STCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKI |
MTKG.S.FGK...K.HTLC..CGSKA.HLQK..TCGKCGY.AK.KRKYN.SAK.KR.NTTGTG..RHL.I | |
Retrocopy | MTKGMS*FGKPPIKMHTLCPCCGSKACHLQK<VTCGKCGYSAKCKRKYNSSAKSKRQNTTGTGEVRHLRI |
Parental | VYRRFRHGFREGTTPKPKRAAVAASSSS |
.Y.RF.H.FREG.TPKPK...VAASSSS | |
Retrocopy | GYHRFSHRFREGATPKPKKTTVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .51 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 109 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .50 RPM |
SRP007412_heart | 0 .00 RPM | 31 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .89 RPM |
SRP007412_liver | 0 .00 RPM | 55 .85 RPM |
SRP007412_testis | 0 .00 RPM | 13 .12 RPM |