RetrogeneDB ID: | retro_sscr_1114 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | GL895619.2:8877..9170(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSSCG00000017430 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 68.69 % |
Parental protein coverage: | 86.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ASKGDDLLPA-GTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQ |
A.K.D.LLP..G.EDY...R..QR.GRKTLTTVQG.ADD.DKK.L.KAF....AC.GTV..HPE.GEV.. | |
Retrocopy | AGKADGLLPV<GPEDYVQVRMKQRSGRKTLTTVQGMADD*DKKRLAKAFTENSACSGTVRQHPECGEVME |
Parental | LQGDQRKNICQFLVEIGLAKDDQLKVHGF |
.QGDQ.KNICQFLVE.G.AKDDQLKV.GF | |
Retrocopy | RQGDQCKNICQFLVEAGRAKDDQLKVRGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 660 .07 RPM |
SRP014902_testis | 0 .00 RPM | 240 .74 RPM |
SRP018288_heart | 0 .00 RPM | 396 .68 RPM |
SRP018288_kidney | 0 .00 RPM | 339 .55 RPM |
SRP018288_liver | 0 .00 RPM | 294 .55 RPM |
SRP018288_lung | 0 .00 RPM | 138 .89 RPM |
SRP018856_adipose | 0 .00 RPM | 379 .54 RPM |
SRP035408_brain | 0 .00 RPM | 170 .46 RPM |
SRP035408_liver | 0 .00 RPM | 109 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005620 | 9 retrocopies | |
Canis familiaris | ENSCAFG00000029584 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000012120 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000014350 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007856 | 11 retrocopies | |
Dipodomys ordii | ENSDORG00000013853 | 4 retrocopies | |
Homo sapiens | ENSG00000173812 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027201 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015360 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000005077 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000031577 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000029667 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000033765 | 15 retrocopies | |
Sorex araneus | ENSSARG00000006287 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005729 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017430 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000017135 | 3 retrocopies |