Parental gene:

EIF1, ENSDNOG00000007856

Aliases:None
Description:eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_41999:7922..9548(-)


>ENSDNOG00000007856
ATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTGATGACCTGCTTCCTGCTGGGAC
TGAGGATTATATCCATATAAGAATTCAACAGAGGAACGGCAGGAAGACCCTTACCACTGTCCAAGGGATCGCTGATGATT
ACGATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAATTTGCCTGCAATGGTACTGTAATTGAGCATCCAGAATATGGA
GAAGTGATTCAGCTACAGGGTGACCAGCGCAAGAACATATGCCAGTTCCTTGTGGAGATTGGACTGGCTAAGGACGACCA
GCTGAAGGTTCATGGGTTTTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 129 .71 RPM
SRP012922_cerebellum 132 .66 RPM
SRP012922_heart 152 .68 RPM
SRP012922_kidney 162 .36 RPM
SRP012922_liver 167 .66 RPM
SRP012922_lung 212 .90 RPM
SRP012922_quadricep_muscle 339 .42 RPM
SRP012922_spleen 177 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005620 ortholog_one2one 9 retrogenes
retro_amel_1335, retro_amel_335, retro_amel_567, retro_amel_575, retro_amel_587, retro_amel_666, retro_amel_782, retro_amel_798, retro_amel_823,
Bos taurus ENSBTAG00000002282 ortholog_one2many 1 retrogene
retro_btau_63,
Canis familiaris ENSCAFG00000029584 ortholog_one2one 4 retrogenes
retro_cfam_1465, retro_cfam_1479, retro_cfam_359, retro_cfam_655,
Callithrix jacchus ENSCJAG00000012120 ortholog_one2many 6 retrogenes
retro_cjac_1237, retro_cjac_2089, retro_cjac_346, retro_cjac_3815, retro_cjac_600, retro_cjac_84,
Cavia porcellus ENSCPOG00000014350 ortholog_one2one 3 retrogenes
retro_cpor_42, retro_cpor_613, retro_cpor_643,
Dipodomys ordii ENSDORG00000013853 possible_ortholog 4 retrogenes
retro_dord_349, retro_dord_350, retro_dord_663, retro_dord_753,
Felis catus ENSFCAG00000024455 ortholog_one2one 2 retrogenes
retro_fcat_1555, retro_fcat_74,
Homo sapiens ENSG00000173812 ortholog_one2one 2 retrogenes
retro_hsap_1659, retro_hsap_271,
Gorilla gorilla ENSGGOG00000027201 ortholog_one2one 2 retrogenes
retro_ggor_1251, retro_ggor_318,
Macropus eugenii ENSMEUG00000015360 ortholog_one2one 6 retrogenes
retro_meug_1513, retro_meug_1635, retro_meug_2189, retro_meug_315, retro_meug_749, retro_meug_821,
Myotis lucifugus ENSMLUG00000005077 ortholog_one2many 3 retrogenes
retro_mluc_233, retro_mluc_305, retro_mluc_330,
Mustela putorius furo ENSMPUG00000010883 ortholog_one2one 6 retrogenes
retro_mputfur_1019, retro_mputfur_1072, retro_mputfur_1239, retro_mputfur_1299, retro_mputfur_41, retro_mputfur_752,
Nomascus leucogenys ENSNLEG00000011013 ortholog_one2one 3 retrogenes
retro_nleu_1482, retro_nleu_2005, retro_nleu_92,
Otolemur garnettii ENSOGAG00000031577 ortholog_one2one 6 retrogenes
retro_ogar_1349, retro_ogar_1701, retro_ogar_1940, retro_ogar_2645, retro_ogar_2899, retro_ogar_856,
Pongo abelii ENSPPYG00000029667 ortholog_one2one 1 retrogene
retro_pabe_127,
Pan troglodytes ENSPTRG00000009175 ortholog_one2one 3 retrogenes
retro_ptro_1261, retro_ptro_227, retro_ptro_2923,
Pteropus vampyrus ENSPVAG00000010629 ortholog_one2one 4 retrogenes
retro_pvam_1152, retro_pvam_471, retro_pvam_665, retro_pvam_923,
Rattus norvegicus ENSRNOG00000033765 possible_ortholog 15 retrogenes
retro_rnor_1088, retro_rnor_1347, retro_rnor_1518, retro_rnor_1744, retro_rnor_1971, retro_rnor_2067, retro_rnor_2171, retro_rnor_2203, retro_rnor_2532, retro_rnor_2548, retro_rnor_2579, retro_rnor_45, retro_rnor_532, retro_rnor_571, retro_rnor_65,
Sorex araneus ENSSARG00000006287 possible_ortholog 1 retrogene
retro_sara_36,
Sarcophilus harrisii ENSSHAG00000005729 possible_ortholog 1 retrogene
retro_shar_42,
Sus scrofa ENSSSCG00000017430 ortholog_one2one 6 retrogenes
retro_sscr_1114, retro_sscr_1126, retro_sscr_1192, retro_sscr_394, retro_sscr_402, retro_sscr_922,
Ictidomys tridecemlineatus ENSSTOG00000002719 ortholog_one2one 15 retrogenes
retro_itri_1082, retro_itri_1184, retro_itri_1369, retro_itri_1398, retro_itri_1401, retro_itri_1716, retro_itri_1784, retro_itri_1846, retro_itri_220, retro_itri_285, retro_itri_526, retro_itri_606, retro_itri_688, retro_itri_702, retro_itri_977,
Tursiops truncatus ENSTTRG00000017135 ortholog_one2one 3 retrogenes
retro_ttru_1664, retro_ttru_224, retro_ttru_315,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_148 77.59 100.00
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2. retro_dnov_402 90.27 100.00
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3. retro_dnov_421 100.00 79.65
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4. retro_dnov_1098 79.82 99.12
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5. retro_dnov_1110 75.32 67.26
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6. retro_dnov_1368 75.65 100.00
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7. retro_dnov_1516 77.39 99.12
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8. retro_dnov_1668 72.81 100.00
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9. retro_dnov_1807 75.64 69.03
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10. retro_dnov_2062 84.21 100.00
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11. retro_dnov_2209 71.60 70.80
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Download FASTA sequences of all ENSDNOG00000007856 retrocopies