RetrogeneDB ID: | retro_hsap_1659 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 16:2872642..2872995(-) | ||
Located in intron of: | ENSG00000007038 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000262154 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSG00000173812 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 78.15 % |
Parental protein coverage: | 97.52 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSAIQNLHS-FDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC |
MS..QNLHS.F.PFAD.SK.DDLLPAGTE.YIH.RI.QRN.RKTL.TV..I..DY.KK.LVKAFK.KF.C | |
Retrocopy | MSTVQNLHS<FHPFADLSKSDDLLPAGTEEYIHARI*QRNDRKTLSTV*AITKDYNKKQLVKAFKRKFPC |
Parental | NGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGFKNLTA |
NGTVIEHPEYGEVIQLQGDQRKNICQFLVE.GLAKDD.L.V.GF..L.A | |
Retrocopy | NGTVIEHPEYGEVIQLQGDQRKNICQFLVEVGLAKDDLLMVQGF*LLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 610 .13 RPM |
bodymap2_adrenal | 0 .00 RPM | 472 .35 RPM |
bodymap2_brain | 0 .00 RPM | 366 .37 RPM |
bodymap2_breast | 0 .04 RPM | 507 .11 RPM |
bodymap2_colon | 0 .00 RPM | 793 .56 RPM |
bodymap2_heart | 0 .00 RPM | 468 .08 RPM |
bodymap2_kidney | 0 .00 RPM | 444 .80 RPM |
bodymap2_liver | 0 .00 RPM | 238 .00 RPM |
bodymap2_lung | 0 .00 RPM | 868 .46 RPM |
bodymap2_lymph_node | 0 .00 RPM | 546 .24 RPM |
bodymap2_ovary | 0 .00 RPM | 617 .73 RPM |
bodymap2_prostate | 0 .00 RPM | 836 .72 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1266 .04 RPM |
bodymap2_testis | 0 .19 RPM | 498 .51 RPM |
bodymap2_thyroid | 0 .00 RPM | 467 .41 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 676 .16 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .09 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |