RetrogeneDB ID: | retro_dnov_1368 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_188007:2790..3131(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSDNOG00000007856 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 75.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MS.IQNL.SFDPFADA.KGDD.L..GT.D..H.RIQQRNGRKTLTTVQGIADDYD.KKLV.AFKKK.ACN | |
Retrocopy | MSTIQNLQSFDPFADATKGDDFLQRGTQDCVHVRIQQRNGRKTLTTVQGIADDYDRKKLVRAFKKKPACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNI-CQFLVEIGLAK-DDQLKVHGF |
G..I.HPE.G.VIQL.GDQRKNI.CQF....GL.K...QLKVHGF | |
Retrocopy | GAGIGHPEHGGVIQLRGDQRKNI>CQFFSQVGLVK>EEQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 129 .71 RPM |
SRP012922_cerebellum | 0 .00 RPM | 132 .66 RPM |
SRP012922_heart | 0 .00 RPM | 152 .68 RPM |
SRP012922_kidney | 0 .00 RPM | 162 .36 RPM |
SRP012922_liver | 0 .00 RPM | 167 .66 RPM |
SRP012922_lung | 0 .00 RPM | 212 .90 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 339 .42 RPM |
SRP012922_spleen | 0 .00 RPM | 177 .87 RPM |