Parental gene:

MMU.2487, ENSMMUG00000007740

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:15:44181137..44195817(-)


>ENSMMUG00000007740
ATGGTGAAAGAAACAACTTACTACGATGTTTTGGGGGTCAAACCCAATGCTACTCAGGAAGAATTGAAAAAGGCTTATAG
GAAACTGGCCTTGAAGTACCATCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAG
TTCTCTCTGATGCAAAGAAAAGGGAATTGTATGACAAAGGAGGAGAACAGGCAATTAAAGAGGGTGGAGCAGGTGGCGGT
TTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGCAAAAATGT
TGTACATCAGCTCTCAGTAACCCTAGAAGACTTATATAACGGTGCAACAAGAAAACTGGCTCTGCAAAAGAATGTGATTT
GTGACAAATGTGAAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCATGGGGAGCGGAT
CAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATAGTTCGAGAGAAGAAGATTCTAGAGGTTCATATTGACA
AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGCGATATTATC
ATTGTGTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTGGT
TGAAGCATTGTGTGGCTTCCAGAAGCCGATATCCACTCTTGACAACCGAACCATAGTCATCACCTCTCATCCAGGTCAGA
TTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTA
ATCATCGAATTTAAGGTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAACTCCTACC
AGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGATCAAGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGC
GCCATTACAATGGAGAAGCATACGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAGACCTCTTAA

Library Parental gene expression (RPM)
SRP007412_brain 212 .00 RPM
SRP007412_brain_prefrontal_cortex 192 .85 RPM
SRP007412_cerebellum 107 .58 RPM
SRP007412_heart 79 .67 RPM
SRP007412_kidney 94 .25 RPM
SRP007412_liver 82 .02 RPM
SRP007412_testis 424 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 possible_ortholog 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Canis familiaris ENSCAFG00000001818 possible_ortholog 23 retrogenes
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Felis catus ENSFCAG00000008729 ortholog_one2one 5 retrogenes
retro_fcat_1241, retro_fcat_1407, retro_fcat_1502, retro_fcat_1984, retro_fcat_811,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Macaca mulatta ENSMMUG00000002247 within_species_paralog 1 retrogene
retro_mmul_36,
Monodelphis domestica ENSMODG00000003384 ortholog_one2one 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Nomascus leucogenys ENSNLEG00000005268 ortholog_one2one 4 retrogenes
retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus ENSOCUG00000004833 ortholog_one2one 2 retrogenes
retro_ocun_516, retro_ocun_70,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2one 1 retrogene
retro_shar_762,
Sus scrofa ENSSSCG00000011000 ortholog_one2one 2 retrogenes
retro_sscr_134, retro_sscr_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_400 69.87 58.44
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2. retro_mmul_1313 73.24 53.12
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3. retro_mmul_1802 70.46 80.35
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4. retro_mmul_2477 92.48 100.00
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5. retro_mmul_2482 90.84 98.49
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6. retro_mmul_2625 88.30 85.14
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Download FASTA sequences of all ENSMMUG00000007740 retrocopies