RetrogeneDB ID: | retro_fcat_1502 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:25374722..25375738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000029692 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008729 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.71 % |
Parental protein coverage: | 85.39 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MVKETTYYDV-LGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE |
MVKETTY.DV.LGVKP.ATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE | |
Retrocopy | MVKETTYCDV<LGVKPSATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE |
Parental | QAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
QAIKEGG.G.G..SPMD.FDMFFGGGGRMQRE.R..NVVHQLSVTL.DL.N.A.RK..L.KNVICDKCEG | |
Retrocopy | QAIKEGGGGSGLDSPMDTFDMFFGGGGRMQREGRSENVVHQLSVTLGDLCNSAIRKPVL*KNVICDKCEG |
Parental | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE |
.GGKKG.VECCPN..GT..QIRIHQ.GPGMVQQIQSVC.ECQ...E.ISPKDRCKSCN.RK..RE.KILE | |
Retrocopy | QGGKKGVVECCPNG*GTRVQIRIHQTGPGMVQQIQSVCIECQDPREWISPKDRCKSCNRRKRIRERKILE |
Parental | VHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPIST |
VHIDKG.KDGQKITFHGEGD.EPGLEP..III.LDQK.HAVFT..GEDL...MDIQLV.AL.GFQKPIST | |
Retrocopy | VHIDKGIKDGQKITFHGEGD*EPGLEPRAIIIILDQKGHAVFTW*GEDLLLYMDIQLVGALYGFQKPIST |
Parental | LDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKL |
.DNRTIVITSHPGQ.VK.GD.KC............YEKG...I..KVNFPE.GFLSPDKL | |
Retrocopy | RDNRTIVITSHPGQTVKQGDTKCAKRRRANLL*GEYEKGHQFIKIKVNFPESGFLSPDKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 104 .44 RPM |
SRP017611_kidney | 0 .10 RPM | 45 .04 RPM |
SRP017611_liver | 0 .00 RPM | 55 .80 RPM |