RetrogeneDB ID: | retro_fcat_1407 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:71965134..71966324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008729 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVL.VKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ | |
Retrocopy | MVKETTYYDVLRVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
AIKEGGAGGGFGSPMDIFDMFF............KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR | |
Retrocopy | AIKEGGAGGGFGSPMDIFDMFFXXXXXXXXXXXXKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
Parental | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRC..C.GRKIVR.KKILEV | |
Retrocopy | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCTRCKGRKIVRGKKILEV |
Parental | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL |
HIDKGMKDGQKITFHGEGD.EPGLEP.DII..LDQKDHAVFTR.G.DLFMCMD.QLVEALC.FQKPISTL | |
Retrocopy | HIDKGMKDGQKITFHGEGDLEPGLEPEDIISILDQKDHAVFTR*GGDLFMCMDVQLVEALCSFQKPISTL |
Parental | DNRTIVITSHPGQIVKHGDIKCVLNE-GMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPER |
DNRTIVITS.PGQIVKHGDIKCVLNE..MPIYRRPYEKG..IIEFKVNFPENGFLSP.KLSLLEKLLPER | |
Retrocopy | DNRTIVITSRPGQIVKHGDIKCVLNE<SMPIYRRPYEKGCPIIEFKVNFPENGFLSPNKLSLLEKLLPER |
Parental | KEVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
KEVEETDEMDQVELVDFDPNQERR.HYNGEAYEDDEHHPRGGVQCQTS | |
Retrocopy | KEVEETDEMDQVELVDFDPNQERRCHYNGEAYEDDEHHPRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 104 .44 RPM |
SRP017611_kidney | 0 .10 RPM | 45 .04 RPM |
SRP017611_liver | 0 .20 RPM | 55 .80 RPM |