RetrogeneDB - Parental gene ENSPPYG00000025926 details

							
>ENSPPYG00000025926
ATGCCACAGAACGAATATATTGAATTACACCGTAAACGCTATGGATACCGTCTGGATTACCATGAGAAAAAGAGAAAGAA

GGAAAGTCGAGAGGCTCATGAACGTTCAAAGAAGGCAAACAAAATGATTGGTCTGAAGGCTAAGCTTTACCATAAACAGC

GTCATGCTGAGAAAATACAAATGAAAAAGACTATCAAGATGCACGAAAAGAGAAACACCAAACAAAAGAATGATGAAAAG

ACTCCACAGGGAGCAGTACCTGCCTATCTGCTGGACAGAGAGGGACAATCTCGAGCTAAAGTACTTTCCAATATGATTAA

ACAGAAACGAAAAGAGAAGGCGGGAAAATGGGAAGTCCCTCTGCCTAAAGTACGTGCCCAGGGAGAAACAGAAGTATTAA

AAAAGTTTATTCGAACAGGAAAAAGAAAGAAGAAGGCATGGAAGAGGATGGTTACTAAAGTGTGCTTTGTTGGAGATGGC

TTTACAAGAAAACCACCTAAATATGAAAGATTCATCAGGCCAATGGGCTTGCGTTTCAAGAAAGCCCACGTAACACATCC

TGAACTGAAAGCCACCTTTTGCCTACCAATACTTGGTGTAAAGAAGAATCCCTCATCCCCACTGTATACAACTTTGGGTG

TTATTACCAAAGGTACTGTCATTGAAGTAAATGTGAGCGAATTGGGCCTTGTGACGCAAGGAGGCAAAGTTATTTGGGGA

AAATATGCTCAGGTTACCAACAATCCTGAAAATGATGGATGTATAAATGCAGTCTTACTGGTTTGA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	10 .95 RPM
SRP007412_cerebellum	12 .28 RPM
SRP007412_heart	14 .60 RPM
SRP007412_kidney	23 .40 RPM
SRP007412_liver	16 .40 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Canis familiaris	ENSCAFG00000008311	possible_ortholog	4 retrogenes	retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Callithrix jacchus	ENSCJAG00000016874	ortholog_one2many	1 retrogene	retro_cjac_116,
Cavia porcellus	ENSCPOG00000006648	ortholog_one2one	1 retrogene	retro_cpor_672,
Dasypus novemcinctus	ENSDNOG00000010615	ortholog_one2one	1 retrogene	retro_dnov_428,
Echinops telfairi	ENSETEG00000004095	ortholog_one2one	13 retrogenes	retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus	ENSFCAG00000011978	possible_ortholog	1 retrogene	retro_fcat_98,
Homo sapiens	ENSG00000164346	ortholog_one2one	4 retrogenes	retro_hsap_1144, retro_hsap_1577, retro_hsap_4731, retro_hsap_493,
Gorilla gorilla	ENSGGOG00000014365	ortholog_one2one	6 retrogenes	retro_ggor_1200, retro_ggor_2136, retro_ggor_2939, retro_ggor_463, retro_ggor_824, retro_ggor_891,
Loxodonta africana	ENSLAFG00000009910	ortholog_one2one	4 retrogenes	retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii	ENSMEUG00000015798	possible_ortholog	3 retrogenes	retro_meug_1191, retro_meug_1408, retro_meug_161,
Microcebus murinus	ENSMICG00000000752	ortholog_one2one	3 retrogenes	retro_mmur_1074, retro_mmur_374, retro_mmur_925,
Macaca mulatta	ENSMMUG00000011196	ortholog_one2one	6 retrogenes	retro_mmul_1984, retro_mmul_2219, retro_mmul_2523, retro_mmul_408, retro_mmul_441, retro_mmul_890,
Monodelphis domestica	ENSMODG00000001900	ortholog_one2one	4 retrogenes	retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Mustela putorius furo	ENSMPUG00000005795	possible_ortholog	5 retrogenes	retro_mputfur_153, retro_mputfur_250, retro_mputfur_510, retro_mputfur_573, retro_mputfur_690,
Nomascus leucogenys	ENSNLEG00000005046	ortholog_one2one	10 retrogenes	retro_nleu_1026, retro_nleu_1507, retro_nleu_1758, retro_nleu_1759, retro_nleu_1929, retro_nleu_2255, retro_nleu_2565, retro_nleu_2675, retro_nleu_768, retro_nleu_943,
Oryctolagus cuniculus	ENSOCUG00000006536	ortholog_one2many	6 retrogenes	retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Ochotona princeps	ENSOPRG00000001867	ortholog_one2one	7 retrogenes	retro_opri_1145, retro_opri_1195, retro_opri_254, retro_opri_427, retro_opri_654, retro_opri_778, retro_opri_83,
Pan troglodytes	ENSPTRG00000016990	ortholog_one2one	6 retrogenes	retro_ptro_1063, retro_ptro_1713, retro_ptro_2105, retro_ptro_3146, retro_ptro_372, retro_ptro_779,
Rattus norvegicus	ENSRNOG00000016530	possible_ortholog	15 retrogenes	retro_rnor_1074, retro_rnor_1317, retro_rnor_1366, retro_rnor_1921, retro_rnor_2630, retro_rnor_2745, retro_rnor_2767, retro_rnor_2817, retro_rnor_2820, retro_rnor_2852, retro_rnor_2877, retro_rnor_2964, retro_rnor_618, retro_rnor_945, retro_rnor_951,
Sorex araneus	ENSSARG00000009424	possible_ortholog	4 retrogenes	retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sarcophilus harrisii	ENSSHAG00000017654	ortholog_one2one	5 retrogenes	retro_shar_292, retro_shar_336, retro_shar_495, retro_shar_679, retro_shar_745,
Ictidomys tridecemlineatus	ENSSTOG00000007959	ortholog_one2one	3 retrogenes	retro_itri_1630, retro_itri_1638, retro_itri_860,
Tupaia belangeri	ENSTBEG00000012978	ortholog_one2one	56 retrogenes	retro_tbel_1062, retro_tbel_1078, retro_tbel_1141, retro_tbel_1317, retro_tbel_1329, retro_tbel_1476, retro_tbel_152, retro_tbel_1548, retro_tbel_1569, retro_tbel_1627, retro_tbel_1733, retro_tbel_1762, retro_tbel_1778, retro_tbel_179, retro_tbel_1845, retro_tbel_1940, retro_tbel_2102, retro_tbel_2113, retro_tbel_2138, retro_tbel_2220, retro_tbel_229, retro_tbel_254, retro_tbel_2586, retro_tbel_2757, retro_tbel_2784, retro_tbel_3016, retro_tbel_3040, retro_tbel_3116, retro_tbel_3264, retro_tbel_3298, retro_tbel_3417, retro_tbel_3514, retro_tbel_3601, retro_tbel_3650, retro_tbel_3724, retro_tbel_3736, retro_tbel_3763, retro_tbel_3795, retro_tbel_4028, retro_tbel_406, retro_tbel_4104, retro_tbel_4169, retro_tbel_4270, retro_tbel_430, retro_tbel_4401, retro_tbel_4422, retro_tbel_4491, retro_tbel_4503, retro_tbel_4513, retro_tbel_4642, retro_tbel_4689, retro_tbel_535, retro_tbel_670, retro_tbel_721, retro_tbel_897, retro_tbel_91,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_240	82.22	67.05	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_950	87.02	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_976	87.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_1300	81.59	76.63	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_1715	87.41	54.79	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_3434	90.86	66.67	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_3570	87.36	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_3678	91.67	68.97	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000025926 retrocopies

Parental gene:	NSA2, ENSPPYG00000025926
Aliases:	None
Description:	NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728]
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	5:74889439..74898343(+)

Parental gene:

NSA2, ENSPPYG00000025926