RetrogeneDB ID: | retro_cpor_672 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_22:27098576..27099292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSCPOG00000006648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.25 % |
Parental protein coverage: | 92.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLL |
E............R.......IGLKAKLYHKQRHAEKIQMKKTIK.HEKRNTKQKNDEKTPQGAVPAYLL | |
Retrocopy | ERRKVERLMNVQRRXXXXXXXIGLKAKLYHKQRHAEKIQMKKTIKIHEKRNTKQKNDEKTPQGAVPAYLL |
Parental | DREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFT |
DREGQS.AKVLSNMIKQK.KEKAGKWEVPLPKVRAQGETEVLKVI.TGKRKKK.WKRMVTKVCFVGDGFT | |
Retrocopy | DREGQSHAKVLSNMIKQK*KEKAGKWEVPLPKVRAQGETEVLKVI*TGKRKKKVWKRMVTKVCFVGDGFT |
Parental | RKPPKYERFIRPMGLRFKKAHVTHPELKAT-FCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLV |
RKPPKYERFIRPMGL.FKKAHVTHPELKAT.FCLPILGV...PSSPLYTTLGVITKGTVIEVNVSELGLV | |
Retrocopy | RKPPKYERFIRPMGLHFKKAHVTHPELKAT<FCLPILGVXXXPSSPLYTTLGVITKGTVIEVNVSELGLV |
Parental | TQGGKVIWGKYAQVTNNPENDGCINAVLLV |
TQGGK.IWGKYAQV.NNPEND.C.NAVLLV | |
Retrocopy | TQGGKAIWGKYAQVNNNPENDACVNAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 15 .41 RPM |
SRP017611_kidney | 0 .10 RPM | 28 .68 RPM |
SRP017611_liver | 0 .22 RPM | 23 .68 RPM |
SRP040447_lung | 0 .03 RPM | 34 .78 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 41 .04 RPM |