RetrogeneDB ID: | retro_shar_679 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856997.1:1450747..1451159(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSSHAG00000017654 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 59.31 % |
Parental protein coverage: | 55. % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
M.QNEYIEL..K.Y.Y.LDY.E........EA.E.....KKM..LKAKLYHK....EKI..KKT.....K | |
Retrocopy | MLQNEYIELY*KWYSYCLDYYEXXXXXXX*EAPEY---LKKMNCLKAKLYHK*HNFEKIKLKKTYQDAWK |
Parental | -RNTKQKNDEKTPQGA-VPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
.RN..QKNDEK.PQ.A....YLLDREG.S.AKVLSNMI.Q....KAG..EV.LPKV.AQGE.E.LKVI.. | |
Retrocopy | <RNINQKNDEKIPQEA<KSVYLLDREG*S*AKVLSNMIEQ--E*KAGI*EVLLPKVHAQGEAEELKVICI |
Parental | GKRKK |
.KRKK | |
Retrocopy | RKRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |