RetrogeneDB ID: | retro_mmul_1984 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:144999362..144999848(-) | ||
Located in intron of: | ENSMMUG00000018490 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000030096 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4417 | ||
Ensembl ID: | ENSMMUG00000011196 | ||
Aliases: | NSA2, TINP1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_001248690] |
Percent Identity: | 77.65 % |
Parental protein coverage: | 64.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EGQSRAKVLSNMIKQKRKE-KAGKWEVPLPKVRAQGETEVLK-VVRTGKRKKKAWKRMVTKVCFVGDGFT |
E.QS.AKVLSNMIK.K.KE.K.GK...P.............K.V..TGKRKK...KRMVT.V.F.GDGFT | |
Retrocopy | ERQSQAKVLSNMIKKKQKE<K*GKMGSPSAQSMCPERNRSIK<VIQTGKRKK---KRMVTEVRFAGDGFT |
Parental | RKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVT |
.KPPKYERFIRPMGLRFKKAHVTHPELKATFCLPI.G.KKNPSSPLYTTLGVITK.TVIEVNVS.LGLVT | |
Retrocopy | KKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPIPGIKKNPSSPLYTTLGVITK-TVIEVNVSKLGLVT |
Parental | QGGKVIW-GKYAQVTNNPENDGCINAVLLV |
QGGKVIW.GKYAQV.NNPENDGCINAVLLV | |
Retrocopy | QGGKVIW<GKYAQVINNPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .08 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 28 .16 RPM |
SRP007412_cerebellum | 0 .06 RPM | 32 .93 RPM |
SRP007412_heart | 0 .06 RPM | 52 .29 RPM |
SRP007412_kidney | 0 .12 RPM | 60 .68 RPM |
SRP007412_liver | 0 .00 RPM | 31 .51 RPM |
SRP007412_testis | 0 .15 RPM | 61 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2105 |