RetrogeneDB ID: | retro_btau_1143 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 28:30766412..30766884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000023037 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSBTAG00000013461 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:Q862I1] |
Percent Identity: | 91.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK |
MKVELCS.SGYK.YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNP.QINWTVLYRRKH.KGQSEEI... | |
Retrocopy | MKVELCSLSGYKTYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPHQINWTVLYRRKHSKGQSEEIXXX |
Parental | R-TRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPK |
..TRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR...IRAAKEAKKAKQASKKTAMAAAKAPTKAAPK | |
Retrocopy | X>TRRAVKFQRAITGASLADIMAKRNQKPEVRKAQRKHVIRAAKEAKKAKQASKKTAMAAAKAPTKAAPK |
Parental | QKIVKPVKVSAPRVGGKR |
QKIVKPVKVSAP.VGGKR | |
Retrocopy | QKIVKPVKVSAP*VGGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 196 .32 RPM |
ERP005899_muscle | 3 .33 RPM | 686 .79 RPM |
SRP017611_brain | 0 .09 RPM | 76 .24 RPM |
SRP017611_kidney | 0 .47 RPM | 176 .16 RPM |
SRP017611_liver | 0 .15 RPM | 118 .32 RPM |
SRP030211_testis | 0 .34 RPM | 73 .34 RPM |