RetrogeneDB ID: | retro_eeur_505 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_331042:685..987(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSEEUG00000009320 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 69.61 % |
Parental protein coverage: | 62.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKGQSEEI-QKKRTRRAVKFQ---RAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKT |
KK.Q...I.QKK..R.........RA..GAS.ADIMAKRNQKP.VRKAQ.EQA.RAAKEAKKAKQASKKT | |
Retrocopy | KKTQTRTI<QKKFKRKKLSMRSNSRATAGASFADIMAKRNQKPKVRKAQPEQATRAAKEAKKAKQASKKT |
Parental | AMAATKAPTKAAPKQKIVKPVKVSAPRVGGKR |
AMAA.K.P..AAPKQKIVKP..V..P.VGGKR | |
Retrocopy | AMAAAKVPAEAAPKQKIVKPMEVATP*VGGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 151 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 318 .63 RPM |
SRP017611_liver | 0 .16 RPM | 245 .99 RPM |